Hi Simon,
I am not 100% this really makes the difference, but the SFC has the F08 Oro Calipers and a different master cylinder. Not sure about the size of the Jota master, but if it is 12mm instead of 13 as with the SFC, this would make a difference...
When I got all the changed things on my SFC put into the official papers (like the GSX-R-Rims, different brakes, different exhaust etc.), the german T?V tested the brakes with a G-force meter. The rear ones decelaration was just above the minimum value of 2 G ... The T?V guy said that this would be below what the engine could brake the bike if you close throttle, but it was within minimum specs, that's why he let me get away with it... :-[