Hello, You have made very good work to document these.
I have worked on pick-up polarity on SFC 1000 some time ago and it is found here:
http://www.laverdaforum.com/forum/index.php/topic,93062.0.html
On the wiring diagrams everything about pick-up polarity is not expressed. Also at least on SFC 1000 diagram the cylinder numbering is strange. I think that the left cylinder should be number 1, center should be number 2 and right should be number 3. Then behind the pick-up cover there is pick-up 1 on the left, number 2 on the bottom and number 3 on the right. The electric boxes are for cylinders 1, 2 and 3 from left to right when looking the bike from right side. The coils are numbered 1, 2 and 3 from front to rear of the bike.
The drawer of the diagram have maybe confused that the system gives the spark on every plug at every crank revolution, not at every second only. Numbering of cylinders 2 and 3 is crossed. The firing order is 1-3-2 dictated by camshaft meaning that the sparker system gives sparks 1-2-3-1-2-3 for entire combustion cycle.