to clean out the holes in the discs, use a cordless drill and a drill bit of the correct size (holes can vary and some even have more than one size of hole in a fancy pattern).
I had drilled discs on TOG for many years and did this a couple of times, but the real problem (with cast discs) is the holes, so weld them up and reface the discs (that was a joke) seriously, I had a set of plain discs come my way and although they were not brilliant condition, and getting a bit thin, they were round and true and HUGELY improved braking in the wet, it seemed to me at the time, that the holes simply "hold" some water and braking is delayed when you apply pad pressure, centrifugal forces will disperse the water, with plain discs, so in the wet, so you need to go as fast as possible (that was joke #2) but the same applies at any speed. I have also noticed, especially on very long and very wet rides, eg Denmark 2006, remember that one James L/S, when it was clear to me that rain was running down the back of both fork legs and draining through the rear mounted callipers, I reverted to front mounted callipers and have continued this now that she is fitted with four pots and 320mm stainless discs, which dont give me any wet trouble and not even buying special pads, just stuff from the local factor.
CLEM