Xavier,
as Piet said, without knowing what age and condition the carbs are in, it is hard to tell why there is a difference.
Have you checked the float settings btw.? Many issues do come from unequal/wrong float settings...
But it is also quite normal that without choke applied, the revs are drastically lower in cold than without choke when the bike is warm. That is what the choke compensates at the end. But I assume you mean it runs lower in cold WITH choke than in warm without choke, right? If so - how much choke do you apply? Most bikes do not need full choke and depending on the engine/settings etc., it might be to much or to less what you apply, so - hard to tell...