I'd be heeding Maurice's advice here, Carlo. I have to say. I'm surprised you're only visiting the state of the engine's health and level of tune at this (what seems) late stage!
Before getting uptight about low power output (so many variables! the least of which is the dyno and sys of measurement - as
Lothar says). I'd find someone in Oz with another Jota and have a drag race with them - it will tell you (very quickly

) how your bike performs against something similar.
Alternatively, take out the donk, send it to Red, and in (probably several months) you'll get back a known quantity. You might be a tad poorer too

.
Can't comprehend how pod filters can affect carb performance so badly, Grant. Must be the quality of filter - haven't heard of such a drastic redusction in efficiency and power since Lee put a stocking over the bell mouth of his Ducati Mk3 350! Only travelled about 1km before tossing that